{"id":814,"date":"2025-07-13T16:01:37","date_gmt":"2025-07-13T21:01:37","guid":{"rendered":"https:\/\/open.qtlmax.com\/guide\/?p=814"},"modified":"2025-07-13T16:12:06","modified_gmt":"2025-07-13T21:12:06","slug":"how-to-draw-a-density-plot-with-phenotypic-data","status":"publish","type":"post","link":"https:\/\/open.qtlmax.com\/guide\/index.php\/2025\/07\/13\/how-to-draw-a-density-plot-with-phenotypic-data\/","title":{"rendered":"How to draw a density plot with phenotypic data"},"content":{"rendered":"\n<p>Figure 1 shows the &#8220;Density plot&#8221; tab page selected within the QTLmax Workbench.<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" src=\"https:\/\/help.qtlmax.com\/kr\/data\/editor\/2401\/thumb-density_plot_1200x693.png\" alt=\"\"\/><\/figure>\n\n\n\n<p>(Figure 1)<br>The &#8220;Density plot&#8221; tab page has many setting options. If you don&#8217;t want to select each setting option individually, just click the <strong>[Load demo]<\/strong> button. You&#8217;ll see that most of the setting options are configured automatically (Figure 2). The input data format is a phenotypic CSV (*.csv) file that includes environmental factors. After replacing the demo data with your own data, you can freely change the settings to your desired values.<\/p>\n\n\n\n<p>You will see the header values of the entered phenotypic data appear as a list within the &#8220;Columns&#8221; box. Select the environmental factor column from the list and click the <strong>[Factor]<\/strong> button; you will then see the items included in that column listed in the table on the right. (Figure 2)<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" src=\"https:\/\/help.qtlmax.com\/kr\/data\/editor\/2401\/thumb-density_plot2_1200x693.png\" alt=\"\"\/><\/figure>\n\n\n\n<p>(Figure 2)<\/p>\n\n\n\n<p>Select each item from the <strong>Factor list box<\/strong> and click the <strong>[Palette]<\/strong> button. From the pop-up palette, choose your desired color. Select colors for all other items using the same method.<\/p>\n\n\n\n<p>Go to the <strong>Workspace 2<\/strong> tab page and select whether to display the <strong>Main title<\/strong>. If you check the display option, enter the <strong>Main title<\/strong> value. Once all settings are complete, click the <strong>[Visualize]<\/strong> button, and you&#8217;ll see the Density plot appear on the right-hand drawing panel (Figure 3).<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" src=\"https:\/\/help.qtlmax.com\/kr\/data\/editor\/2401\/thumb-density_plot3_1200x693.png\" alt=\"\"\/><\/figure>\n\n\n\n<p>(Figure 3)<\/p>\n\n\n\n<p><br><\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Figure 1 shows the &#8220;Density plot&#8221; tab page selected within the QTLmax Workbench. (Figure 1)The &#8220;Density plot&#8221; tab page has many setting options. If you don&#8217;t want to select each setting option individually, just click the [Load demo] button. You&#8217;ll see that most of the setting options are configured automatically (Figure 2). The input data [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_bbp_topic_count":0,"_bbp_reply_count":0,"_bbp_total_topic_count":0,"_bbp_total_reply_count":0,"_bbp_voice_count":0,"_bbp_anonymous_reply_count":0,"_bbp_topic_count_hidden":0,"_bbp_reply_count_hidden":0,"_bbp_forum_subforum_count":0,"footnotes":""},"categories":[1],"tags":[],"class_list":["post-814","post","type-post","status-publish","format-standard","hentry","category-guide"],"_links":{"self":[{"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/posts\/814","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/comments?post=814"}],"version-history":[{"count":6,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/posts\/814\/revisions"}],"predecessor-version":[{"id":822,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/posts\/814\/revisions\/822"}],"wp:attachment":[{"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/media?parent=814"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/categories?post=814"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/open.qtlmax.com\/guide\/index.php\/wp-json\/wp\/v2\/tags?post=814"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}